From 7780ab792a3d3a2efc7fa4081b5b93f6d312b493 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Sun, 25 Jun 2017 11:53:35 -0400 Subject: [PATCH] removed some comment lines --- align.c | 7 ------- 1 file changed, 7 deletions(-) diff --git a/align.c b/align.c index 6b26265..fdc3ac7 100644 --- a/align.c +++ b/align.c @@ -188,12 +188,6 @@ static void mm_align1(void *km, const mm_mapopt_t *opt, const mm_idx_t *mi, int if (i == r->cnt - 1 || qe - qs >= opt->min_ksw_len || re - rs >= opt->min_ksw_len) { qseq = &qseq0[rev][qs]; mm_idx_getseq(mi, rid, rs, re, tseq); - #if 0 - int k; - fprintf(stderr, "===> [%d] %d-%d %c (%s:%d-%d) <===\n", i, qs, qe, "+-"[rev], mi->seq[rid].name, rs, re); - for (k = 0; k < re - rs; ++k) fputc("ACGTN"[tseq[k]], stderr); fputc('\n', stderr); - for (k = 0; k < qe - qs; ++k) fputc("ACGTN"[qseq[k]], stderr); fputc('\n', stderr); - #endif ksw_extz2_sse(km, qe - qs, qseq, re - rs, tseq, 5, mat, opt->q, opt->e, bw, opt->zdrop, KSW_EZ_DYN_BAND, ez); mm_append_cigar(r, ez->n_cigar, ez->cigar); mm_update_extra(r->p, qseq, tseq, ez->n_cigar, ez->cigar, 0); @@ -210,7 +204,6 @@ static void mm_align1(void *km, const mm_mapopt_t *opt, const mm_idx_t *mi, int } else { r->p->score += ez->score; } - //for (k = 0; k < r->cigar->n; ++k) fprintf(stderr, "%d%c", r->cigar->cigar[k]>>4, "MID"[r->cigar->cigar[k]&0xf]); fputc('\n', stderr); rs = re, qs = qe; } }