diff --git a/minimap2.1 b/minimap2.1 index a91c9d0..4d40c59 100644 --- a/minimap2.1 +++ b/minimap2.1 @@ -94,10 +94,11 @@ bases in .IR target.fa , minimap2 needs to read .I query.fa -multiple times to map it against each batch of target sequences. +multiple times to map it against each batch of target sequences. This would create a multi-part index. .I NUM may be ending with k/K/m/M/g/G. NB: mapping quality is incorrect given a -multi-part index. +multi-part index. See also option +.BR --split-prefix . .TP .B --idx-no-seq Don't store target sequences in the index. It saves disk space and memory but