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increase seed occurrences

This commit is contained in:
Heng Li 2017-09-08 22:42:39 -04:00
parent 0031158936
commit 709b6ec1f1
1 changed files with 1 additions and 0 deletions
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main.c
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@ -166,6 +166,7 @@ int main(int argc, char *argv[])
opt.min_dp_max = 50; opt.min_dp_max = 50;
opt.best_n = 10; opt.best_n = 10;
opt.bw = 100; opt.bw = 100;
opt.mid_occ_frac = 1e-4f;
} else if (strcmp(optarg, "splice") == 0 || strcmp(optarg, "cdna") == 0) { } else if (strcmp(optarg, "splice") == 0 || strcmp(optarg, "cdna") == 0) {
k = 15, w = 5; k = 15, w = 5;
opt.flag |= MM_F_SPLICE | MM_F_SPLICE_FOR | MM_F_SPLICE_REV; opt.flag |= MM_F_SPLICE | MM_F_SPLICE_FOR | MM_F_SPLICE_REV;