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r887: fixed a bug in asmgene

This commit is contained in:
Heng Li 2018-11-11 21:35:19 -05:00
parent 91f548b497
commit 62bbadf668
1 changed files with 2 additions and 2 deletions
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4
misc/paftools.js
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@ -1,6 +1,6 @@
#!/usr/bin/env k8 #!/usr/bin/env k8
var paftools_version = '2.14-r885-dirty'; var paftools_version = '2.14-r887-dirty';
/***************************** /*****************************
***** Library functions ***** ***** Library functions *****
@ -858,7 +858,7 @@ function paf_asmgene(args)
if (i == getopt.ind) refpos[t[0]] = [t[0], t[1], t[5], t[7], t[8]]; if (i == getopt.ind) refpos[t[0]] = [t[0], t[1], t[5], t[7], t[8]];
if (gene[t[0]] == null) gene[t[0]] = []; if (gene[t[0]] == null) gene[t[0]] = [];
if (a.length && t[0] != a[0][0]) { if (a.length && t[0] != a[0][0]) {
gene[t[0]][i - getopt.ind] = process_query(opt, a); gene[a[0][0]][i - getopt.ind] = process_query(opt, a);
a = []; a = [];
} }
a.push([t[0], ql, qs, qe, mlen, blen]); a.push([t[0], ql, qs, qe, mlen, blen]);