diff --git a/minimap2.1 b/minimap2.1 index bfd3f59..7bc0e6c 100644 --- a/minimap2.1 +++ b/minimap2.1 @@ -1,4 +1,4 @@ -.TH minimap2 1 "16 January 2018" "minimap2-2.7-dirty (r655)" "Bioinformatics tools" +.TH minimap2 1 "26 January 2018" "minimap2-2.7-dirty (r664)" "Bioinformatics tools" .SH NAME .PP minimap2 - mapping and alignment between collections of DNA sequences @@ -219,6 +219,10 @@ strand of the reference and the second read to the reverse stand. .TP .B --rev-only Only map to the reverse complement strand of the reference sequences. +.TP +.BR --heap-sort [= no | yes ] +If yes, sort anchors with heap merge, instead of radix sort. Heap merge is +faster for short reads, but slower for long reads. [no] .SS Alignment options .TP 10 .BI -A \ INT @@ -441,7 +445,7 @@ tag ignores introns to demote hits to pseudogenes. Short single-end reads without splicing .RB ( -k21 .B -w11 --sr --frag -A2 -B8 -O12,32 -E2,1 -r50 -p.5 -N20 -f1000,5000 -n2 -m20 -.B -s40 -g200 -2K50m +.B -s40 -g200 -2K50m --heap-sort .BR --secondary=no ). .RE .SS Miscellaneous options