From 5ebe868db58f594d5d1c168b30b731ac02a4a5a2 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Sat, 1 Jul 2017 11:32:49 -0400 Subject: [PATCH] added two more new lines --- minimap2.1 | 2 ++ 1 file changed, 2 insertions(+) diff --git a/minimap2.1 b/minimap2.1 index 1c7171b..4fb09bf 100644 --- a/minimap2.1 +++ b/minimap2.1 @@ -246,6 +246,7 @@ _ 11 int Number bases, including gaps, in the mapping 12 int Mapping quality (0-255 with 255 for missing) .TE + .PP When alignment is available, column 11 gives the total number of sequence matches, mismatches and gaps in the alignment; column 10 divided by column 11 @@ -267,6 +268,7 @@ ms i DP score of the max scoring segment in the alignment nn i Number of ambiguous bases in the alignment cg Z CIGAR string (only in PAF) .TE + .SH SEE ALSO .PP miniasm(1), minimap(1), bwa(1).