diff --git a/minimap2.1 b/minimap2.1 index 1c7171b..4fb09bf 100644 --- a/minimap2.1 +++ b/minimap2.1 @@ -246,6 +246,7 @@ _ 11 int Number bases, including gaps, in the mapping 12 int Mapping quality (0-255 with 255 for missing) .TE + .PP When alignment is available, column 11 gives the total number of sequence matches, mismatches and gaps in the alignment; column 10 divided by column 11 @@ -267,6 +268,7 @@ ms i DP score of the max scoring segment in the alignment nn i Number of ambiguous bases in the alignment cg Z CIGAR string (only in PAF) .TE + .SH SEE ALSO .PP miniasm(1), minimap(1), bwa(1).