From 4422c0c6f93ab005874604b7c51575780b0d49eb Mon Sep 17 00:00:00 2001 From: Don Kirkby Date: Fri, 14 May 2021 12:16:12 -0700 Subject: [PATCH 1/2] Typo fix in Python README. Thanks for sharing minimap2. Here's a little fix. --- python/README.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/python/README.rst b/python/README.rst index 3d0fae8..3082980 100644 --- a/python/README.rst +++ b/python/README.rst @@ -144,7 +144,7 @@ properties: * **mlen**: length of the matching bases in the alignment, excluding ambiguous base matches. -* **NM**: number of mismatches, gaps and ambiguous poistions in the alignment +* **NM**: number of mismatches, gaps and ambiguous positions in the alignment * **trans_strand**: transcript strand. +1 if on the forward strand; -1 if on the reverse strand; 0 if unknown From 10502e2a78dcc7be87b0a3ecb0e70900b386e30a Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Thu, 13 May 2021 17:55:47 +0200 Subject: [PATCH 2/2] Fixed typo in Readme.md deltion -> deletion --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index dafb655..9865b93 100644 --- a/README.md +++ b/README.md @@ -274,7 +274,7 @@ CGATCGATAAATAGAGTAG---GAATAGCA CGATCG---AATAGAGTAGGTCGAATtGCA ``` is represented as `:6-ata:10+gtc:4*at:3`, where `:[0-9]+` represents an -identical block, `-ata` represents a deltion, `+gtc` an insertion and `*at` +identical block, `-ata` represents a deletion, `+gtc` an insertion and `*at` indicates reference base `a` is substituted with a query base `t`. It is similar to the `MD` SAM tag but is standalone and easier to parse.