diff --git a/main.c b/main.c
index 6b4bcc8..c7c152a 100644
--- a/main.c
+++ b/main.c
@@ -6,7 +6,7 @@
 #include "mmpriv.h"
 #include "getopt.h"
 
-#define MM_VERSION "2.2-r461-dirty"
+#define MM_VERSION "2.2-r462-dirty"
 
 #ifdef __linux__
 #include <sys/resource.h>
diff --git a/pe.c b/pe.c
index 827be83..c3174bc 100644
--- a/pe.c
+++ b/pe.c
@@ -143,6 +143,8 @@ void mm_pair(void *km, int max_gap_ref, int pe_bonus, int sub_diff, int match_sc
 			if (r[1]->mapq < 1) r[1]->mapq = 1;
 		}
 	}
+	mm_set_sam_pri(n_regs[0], regs[0]);
+	mm_set_sam_pri(n_regs[1], regs[1]);
 
 	kfree(km, a);
 	kfree(km, sc.a);