diff --git a/misc/paftools.js b/misc/paftools.js index 1f7a750..2df7de4 100755 --- a/misc/paftools.js +++ b/misc/paftools.js @@ -1,6 +1,6 @@ #!/usr/bin/env k8 -var paftools_version = '2.13-r869-dirty'; +var paftools_version = '2.13-r870-dirty'; /***************************** ***** Library functions ***** @@ -831,7 +831,7 @@ function paf_asmgene(args) file.close(); } - var col1 = ["full_sgl", "full_dup", "frag", "part50+", "part50-"]; + var col1 = ["full_sgl", "full_dup", "frag", "part50+", "part10+", "part10-"]; var rst = []; for (var k = 0; k < col1.length; ++k) { rst[k] = []; @@ -846,7 +846,8 @@ function paf_asmgene(args) else if (gene[g][i][0] > 1) rst[1][i]++; else if (gene[g][i][1] >= opt.min_cov) rst[2][i]++; else if (gene[g][i][1] >= 0.5) rst[3][i]++; - else rst[4][i]++; + else if (gene[g][i][1] >= 0.1) rst[4][i]++; + else rst[5][i]++; } } print(header.join("\t"));