From 52ffbc9e0c7acd687c688c9c22a97dcc84f84e44 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Thu, 2 Nov 2017 15:51:23 -0400 Subject: [PATCH] added bowtie2 and snap versions --- tex/minimap2.tex | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/tex/minimap2.tex b/tex/minimap2.tex index cfb19ed..2017eb8 100644 --- a/tex/minimap2.tex +++ b/tex/minimap2.tex @@ -530,8 +530,8 @@ able to improve their accuracy further. \subsection{Aligning short genomic reads} -We evaluated minimap2 along with Bowtie2~\citep{Langmead:2012fk}, BWA-MEM and -SNAP~\citep{Zaharia:2011aa}. Minimap2 is 3--4 times as fast as Bowtie2 and +We evaluated minimap2 along with Bowtie2~(v2.3.3; \citealt{Langmead:2012fk}), BWA-MEM and +SNAP (v1.0beta23; \citealt{Zaharia:2011aa}). Minimap2 is 3--4 times as fast as Bowtie2 and BWA-MEM, but is 1.3 times slower than SNAP. Minimap2 is more accurate on this simulated data set than Bowtie2 and SNAP but less accurate than BWA-MEM (Fig.~\ref{fig:eval}b). Closer investigation reveals that BWA-MEM achieves