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added bowtie2 and snap versions

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Heng Li 2017-11-02 15:51:23 -04:00
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tex/minimap2.tex
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@ -530,8 +530,8 @@ able to improve their accuracy further.
\subsection{Aligning short genomic reads}
We evaluated minimap2 along with Bowtie2~\citep{Langmead:2012fk}, BWA-MEM and
SNAP~\citep{Zaharia:2011aa}. Minimap2 is 3--4 times as fast as Bowtie2 and
We evaluated minimap2 along with Bowtie2~(v2.3.3; \citealt{Langmead:2012fk}), BWA-MEM and
SNAP (v1.0beta23; \citealt{Zaharia:2011aa}). Minimap2 is 3--4 times as fast as Bowtie2 and
BWA-MEM, but is 1.3 times slower than SNAP. Minimap2 is more accurate on this
simulated data set than Bowtie2 and SNAP but less accurate than BWA-MEM
(Fig.~\ref{fig:eval}b). Closer investigation reveals that BWA-MEM achieves