diff --git a/main.c b/main.c index f452a69..eca3a99 100644 --- a/main.c +++ b/main.c @@ -7,7 +7,7 @@ #include "mmpriv.h" #include "ketopt.h" -#define MM_VERSION "2.19-r1057" +#define MM_VERSION "2.19-r1059-dirty" #ifdef __linux__ #include @@ -296,6 +296,8 @@ int main(int argc, char *argv[]) } if (!fnw && !(opt.flag&MM_F_CIGAR)) ipt.flag |= MM_I_NO_SEQ; + if (opt.bw < opt.bw_long && (opt.flag&MM_F_RMQ)) + opt.bw = opt.bw_long; if (mm_check_opt(&ipt, &opt) < 0) return 1; if (opt.best_n == 0) {