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r164: unmapped read not properly flagged

This commit is contained in:
Heng Li 2017-07-08 18:16:18 -04:00
parent 42846ce65d
commit 4ee3202539
2 changed files with 2 additions and 2 deletions
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2
format.c
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@ -111,7 +111,7 @@ void mm_write_sam(kstring_t *s, const mm_idx_t *mi, const bseq1_t *t, const mm_r
int flag = 0; int flag = 0;
s->l = 0; s->l = 0;
if (r == 0) { if (r == 0) {
mm_sprintf_lite(s, "%s\t0\t*\t0\t0\t*\t*\t0\t0\t", t->name); mm_sprintf_lite(s, "%s\t4\t*\t0\t0\t*\t*\t0\t0\t", t->name);
sam_write_sq(s, t->seq, t->l_seq, 0, 0); sam_write_sq(s, t->seq, t->l_seq, 0, 0);
mm_sprintf_lite(s, "\t"); mm_sprintf_lite(s, "\t");
if (t->qual) sam_write_sq(s, t->qual, t->l_seq, 0, 0); if (t->qual) sam_write_sq(s, t->qual, t->l_seq, 0, 0);

2
main.c
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@ -10,7 +10,7 @@
#include "minimap.h" #include "minimap.h"
#include "mmpriv.h" #include "mmpriv.h"
#define MM_VERSION "2.0-r163-pre" #define MM_VERSION "2.0-r164-pre"
void liftrlimit() void liftrlimit()
{ {