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r163: reduced long join score requirement 

because the chaining score is generally smaller with the last few commits.
This commit is contained in:
Heng Li 2017-07-08 15:51:52 -04:00
parent 3f6a0b0b5c
commit 42846ce65d
2 changed files with 2 additions and 2 deletions
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2
main.c
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@ -10,7 +10,7 @@
#include "minimap.h" #include "minimap.h"
#include "mmpriv.h" #include "mmpriv.h"
#define MM_VERSION "2.0-r162-pre" #define MM_VERSION "2.0-r163-pre"
void liftrlimit() void liftrlimit()
{ {

2
map.c
View File

@ -28,7 +28,7 @@ void mm_mapopt_init(mm_mapopt_t *opt)
opt->max_join_long = 20000; opt->max_join_long = 20000;
opt->max_join_short = 2000; opt->max_join_short = 2000;
opt->min_join_flank_sc = 1000; opt->min_join_flank_sc = 500;
opt->a = 2, opt->b = 4, opt->q = 4, opt->e = 2, opt->q2 = 24, opt->e2 = 1; opt->a = 2, opt->b = 4, opt->q = 4, opt->e = 2, opt->q2 = 24, opt->e2 = 1;
opt->zdrop = 400; opt->zdrop = 400;