diff --git a/misc/README.md b/misc/README.md
index 2750409..067738a 100644
--- a/misc/README.md
+++ b/misc/README.md
@@ -17,7 +17,8 @@ minimap2 -cx splice ref.fa rna-seq.fq | splice2bed.js - # convert splice aln t
- [Convert SAM to PAF](#sam2paf)
- [Convert GTF/GFF3 to BED12 format](#gff2bed)
- [Convert spliced alignment to BED12](#splice2bed)
- - [Convert spliced alignment to BED12](#eval)
+ - [Evaluating mapping accuracy with simulated reads](#mapeval)
+ - [Evaluating read overlap sensitivity](#oveval)
## Introduction
@@ -54,7 +55,7 @@ seamlessly works with both GTF and GFF3.
Script [splice2bed.js](splice2bed.js) converts spliced alignment in SAM or PAF
to 12-column BED format.
-### Evaluating mapping accuracy with simulated reads
+### Evaluating mapping accuracy with simulated reads
Script [sim-pbsim.js](sim-pbsim.js) converts the MAF output of [pbsim][pbsim]
to FASTQ and encodes the true mapping position in the read name in a format like
@@ -85,6 +86,11 @@ mappings, accumulative mapping error rate and the accumulative number of
mapped reads. The U-line gives the number of unmapped reads if they are present
in the SAM file.
+### Evaluating read overlap sensitivity
+
+Script [ov-eval.js](ov-eval.js) takes read-to-reference alignment in PAF and
+read overlaps in PAF and evaluates the sensitivity.
+
[cs]: https://github.com/lh3/minimap2#cs
[k8]: https://github.com/attractivechaos/k8
[maf]: https://genome.ucsc.edu/FAQ/FAQformat#format5
diff --git a/misc/ov-eval.js b/misc/ov-eval.js
old mode 100644
new mode 100755
index db8f2eb..7be4a5e
--- a/misc/ov-eval.js
+++ b/misc/ov-eval.js
@@ -1,3 +1,5 @@
+#!/usr/bin/env k8
+
var getopt = function(args, ostr) {
var oli; // option letter list index
if (typeof(getopt.place) == 'undefined')