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renamed mm2-lite.py to minimap2.py

This commit is contained in:
Heng Li 2017-09-17 09:41:37 -04:00
parent 89151b2588
commit 3edf2a9130
2 changed files with 2 additions and 2 deletions
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2
.gitignore vendored
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@ -5,4 +5,4 @@
*.o *.o
*.dSYM *.dSYM
minimap2 minimap2
minimap2.c mappy.c

2
python/mm2-lite.py → python/minimap2.py
View File

@ -37,7 +37,7 @@ def readfq(fp): # multi-line fasta/fastq parser
def main(argv): def main(argv):
opts, args = getopt.getopt(argv[1:], "") opts, args = getopt.getopt(argv[1:], "")
if len(args) < 2: if len(args) < 2:
print("Usage: mm2-lite.py <ref.fa>|<ref.mmi> <query.fq>") print("Usage: minimap2.py <ref.fa>|<ref.mmi> <query.fq>")
sys.exit(1) sys.exit(1)
a = mp.Aligner(args[0]) # load/build index a = mp.Aligner(args[0]) # load/build index
if not a: if not a: