From 3edf2a9130e6c3df5748ff5d170b45ca67c6d29b Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@me.com>
Date: Sun, 17 Sep 2017 09:41:37 -0400
Subject: [PATCH] renamed mm2-lite.py to minimap2.py

---
 .gitignore                          | 2 +-
 python/{mm2-lite.py => minimap2.py} | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)
 rename python/{mm2-lite.py => minimap2.py} (94%)

diff --git a/.gitignore b/.gitignore
index bacc0e7..d5a6dd6 100644
--- a/.gitignore
+++ b/.gitignore
@@ -5,4 +5,4 @@
 *.o
 *.dSYM
 minimap2
-minimap2.c
+mappy.c
diff --git a/python/mm2-lite.py b/python/minimap2.py
similarity index 94%
rename from python/mm2-lite.py
rename to python/minimap2.py
index 85935a4..415a79b 100755
--- a/python/mm2-lite.py
+++ b/python/minimap2.py
@@ -37,7 +37,7 @@ def readfq(fp): # multi-line fasta/fastq parser
 def main(argv):
 	opts, args = getopt.getopt(argv[1:], "")
 	if len(args) < 2:
-		print("Usage: mm2-lite.py <ref.fa>|<ref.mmi> <query.fq>")
+		print("Usage: minimap2.py <ref.fa>|<ref.mmi> <query.fq>")
 		sys.exit(1)
 	a = mp.Aligner(args[0]) # load/build index
 	if not a: