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r1121: updated obsolete settings in manpage 

Resolve #851
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Heng Li 2021-12-26 14:33:14 -05:00
parent 36942ff711
commit 3bde3450a0
1 changed files with 3 additions and 3 deletions
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minimap2.1
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@ -1,4 +1,4 @@
.TH minimap2 1 "18 November 2021" "minimap2-2.23 (r1111)" "Bioinformatics tools"
.TH minimap2 1 "18 December 2021" "minimap2-2.24 (r1121)" "Bioinformatics tools"
.SH NAME
.PP
minimap2 - mapping and alignment between collections of DNA sequences
@ -77,7 +77,7 @@ SAM format.
Minimizer k-mer length [15]
.TP
.BI -w \ INT
Minimizer window size [2/3 of k-mer length]. A minimizer is the smallest k-mer
Minimizer window size [10]. A minimizer is the smallest k-mer
in a window of w consecutive k-mers.
.TP
.B -H
@ -606,7 +606,7 @@ Long-read splice alignment for PacBio CCS reads
.B sr
Short single-end reads without splicing
.RB ( -k21
.B -w11 --sr --frag=yes -A2 -B8 -O12,32 -E2,1 -b0 -r100 -p.5 -N20 -f1000,5000 -n2 -m20
.B -w11 --sr --frag=yes -A2 -B8 -O12,32 -E2,1 -b0 -r100 -p.5 -N20 -f1000,5000 -n2 -m25
.B -s40 -g100 -2K50m --heap-sort=yes
.BR --secondary=no ).
.TP