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Release minimap2-2.5 (r572)

This commit is contained in:
Heng Li 2017-11-11 11:29:28 -05:00
parent 481d8239e9
commit 3b518271ee
5 changed files with 29 additions and 6 deletions
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23
NEWS.md
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@ -1,3 +1,26 @@
Release 2.5-r572 (11 November 2017)
-----------------------------------
This release fixes several bugs and brings a couple of minor improvements:
* Fixed a severe bug that leads to incorrect mapping coordinates in rare
corner cases.
* Fixed underestimated mapping quality for chimeric alignments when the whole
query sequence contain many repetitive minimizers, and for chimeric
alignments caused by Z-drop.
* Fixed two bugs in Python binding: incorrect strand field (#57) and incorrect
sequence names for Python3 (#55).
* Improved mapping accuracy for highly overlapping paired ends.
* Added option -Y to use soft clipping for supplementary alignments (#56).
(2.5: 11 November 2017, r572)
Release 2.4-r555 (6 November 2017)
----------------------------------

6
README.md
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[![Release](https://img.shields.io/badge/Release-v2.4-blue.svg?style=flat)](https://github.com/lh3/minimap2/releases)
[![Release](https://img.shields.io/badge/Release-v2.5-blue.svg?style=flat)](https://github.com/lh3/minimap2/releases)
[![BioConda](https://img.shields.io/conda/vn/bioconda/minimap2.svg?style=flat)](https://anaconda.org/bioconda/minimap2)
[![PyPI](https://img.shields.io/pypi/v/mappy.svg?style=flat)](https://pypi.python.org/pypi/mappy)
[![Python Version](https://img.shields.io/pypi/pyversions/mappy.svg?style=flat)](https://pypi.python.org/pypi/mappy)
@ -71,9 +71,9 @@ Detailed evaluations are available from the [minimap2 preprint][preprint].
Minimap2 only works on x86-64 CPUs. You can acquire precompiled binaries from
the [release page][release] with:
```sh
wget --no-check-certificate -O- https://github.com/lh3/minimap2/releases/download/v2.4/minimap2-2.4_x64-linux.tar.bz2 \
curl -L https://github.com/lh3/minimap2/releases/download/v2.5/minimap2-2.5_x64-linux.tar.bz2 \
| tar -jxvf -
./minimap2-2.4_x64-linux/minimap2
./minimap2-2.5_x64-linux/minimap2
```
If you want to compile from the source, you need to have a C compiler, GNU make
and zlib development files installed. Then type `make` in the source code

2
main.c
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#include "mmpriv.h"
#include "getopt.h"
#define MM_VERSION "2.4-r569-dirty"
#define MM_VERSION "2.5-r572"
#ifdef __linux__
#include <sys/resource.h>

2
minimap2.1
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.TH minimap2 1 "6 November 2017" "minimap2-2.4 (r555)" "Bioinformatics tools"
.TH minimap2 1 "11 November 2017" "minimap2-2.5 (r572)" "Bioinformatics tools"
.SH NAME
.PP
minimap2 - mapping and alignment between collections of DNA sequences

2
setup.py
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@ -23,7 +23,7 @@ def readme():
setup(
name = 'mappy',
version = '2.4',
version = '2.5',
url = 'https://github.com/lh3/minimap2',
description = 'Minimap2 python binding',
long_description = readme(),