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renamed paf2ovlp to ov-eval

This commit is contained in:
Heng Li 2017-12-24 18:04:00 -05:00
parent 626f10e0d0
commit 3a375d3436
1 changed files with 1 additions and 1 deletions
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2
misc/paf2ovlp.js → misc/ov-eval.js
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@ -43,7 +43,7 @@ while ((c = getopt(arguments, "q:l:f:")) != null) {
else if (c == 'f') min_frac = parseFloat(getopt.arg); else if (c == 'f') min_frac = parseFloat(getopt.arg);
} }
if (arguments.length - getopt.ind < 2) { if (arguments.length - getopt.ind < 2) {
print("Usage: sort -k6,6 -k8,8n to-ref.paf | k8 paf2ovlp.js [options] - <ovlp.paf>"); print("Usage: sort -k6,6 -k8,8n to-ref.paf | k8 ov-eval.js [options] - <ovlp.paf>");
print("Options:"); print("Options:");
print(" -l INT min overlap length [2000]"); print(" -l INT min overlap length [2000]");
print(" -q INT min mapping quality [10]"); print(" -q INT min mapping quality [10]");