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use mapq threshold

This commit is contained in:
Heng Li 2017-11-12 19:01:34 -05:00
parent 03169d590b
commit 379457c18b
1 changed files with 1 additions and 1 deletions
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misc/paf2diff.js
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@ -92,7 +92,7 @@ while (file.readline(buf) >= 0) {
var m, t = line.split("\t", 12);
for (var i = 6; i <= 11; ++i)
t[i] = parseInt(t[i]);
if (t[10] < min_cov_len || t[11] == 0) continue;
if (t[10] < min_cov_len || t[11] < min_mapq) continue;
var ctg = t[5], x = t[7], end = t[8];
// compute regions covered by 1 contig
if (ctg != c1_ctg || x >= c1_end) {