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disable k-mer intersection for now 

My current focus is long-read mapping. This functionality is not needed right now.
This commit is contained in:
Heng Li 2017-06-11 14:13:41 -04:00
parent b04e4b9215
commit 372698bb23
1 changed files with 2 additions and 2 deletions
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4
map.c
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@ -89,7 +89,7 @@ static void mm_dust_minier(mm128_v *mini, int l_seq, const char *seq, int sdust_
}
mini->n = k;
}
#if 0
int mm_pair_thin_core(mm_tbuf_t *b, uint64_t x, int radius, int rel, int st0, int n, const uint64_t *z, uint64_v *a)
{
int i, st = st0, en = n, mid = en - 1;
@ -154,7 +154,7 @@ void mm_pair_thin(mm_tbuf_t *b, int radius, mm_match_t *m1, mm_match_t *m2)
m[i]->n = a[i].n, m[i]->x.r = a[i].a, m[i]->is_alloc = 1;
// printf("%d,%d; %d,%d\n", m[0]->qpos>>1, m[1]->qpos>>1, m[0]->n, m[1]->n);
}
#endif
mm_reg1_t *mm_gen_reg(int qlen, int n_u, uint64_t *u, mm128_t *a)
{
mm_reg1_t *r;