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r236: in cs tag, output differences in lowercase 

for easy eyeballing
This commit is contained in:
Heng Li 2017-07-31 12:17:48 -04:00
parent 4c0713ee14
commit 35f232c3fa
2 changed files with 4 additions and 4 deletions
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6
format.c
View File

@ -86,7 +86,7 @@ static void write_cs(void *km, kstring_t *s, const mm_idx_t *mi, const mm_bseq1_
tmp[l_tmp] = 0;
mm_sprintf_lite(s, "=%s", tmp);
}
mm_sprintf_lite(s, "*%c%c", "ACGTN"[tseq[t_off + j]], "ACGTN"[qseq[q_off + j]]);
mm_sprintf_lite(s, "*%c%c", "acgtn"[tseq[t_off + j]], "acgtn"[qseq[q_off + j]]);
} else tmp[l_tmp++] = "ACGTN"[qseq[q_off + j]];
}
if (l_tmp > 0) {
@ -96,12 +96,12 @@ static void write_cs(void *km, kstring_t *s, const mm_idx_t *mi, const mm_bseq1_
q_off += len, t_off += len;
} else if (op == 1) {
for (j = 0, tmp[len] = 0; j < len; ++j)
tmp[j] = "ACGTN"[qseq[q_off + j]];
tmp[j] = "acgtn"[qseq[q_off + j]];
mm_sprintf_lite(s, "+%s", tmp);
q_off += len;
} else if (op == 2) {
for (j = 0, tmp[len] = 0; j < len; ++j)
tmp[j] = "ACGTN"[tseq[t_off + j]];
tmp[j] = "acgtn"[tseq[t_off + j]];
mm_sprintf_lite(s, "-%s", tmp);
t_off += len;
}

2
main.c
View File

@ -8,7 +8,7 @@
#include "minimap.h"
#include "mmpriv.h"
#define MM_VERSION "2.0rc1-r235-dirty"
#define MM_VERSION "2.0rc1-r236-dirty"
void liftrlimit()
{