zzh
/
minimap2
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

r455: set max_occ on command line

This commit is contained in:
Heng Li 2017-09-29 22:18:43 -04:00
parent 04fb2c2ec0
commit 340483821e
1 changed files with 4 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

6
main.c
View File

@ -6,7 +6,7 @@
#include "mmpriv.h"
#include "getopt.h"
#define MM_VERSION "2.2-r454-dirty"
#define MM_VERSION "2.2-r455-dirty"
#ifdef __linux__
#include <sys/resource.h>
@ -125,9 +125,11 @@ int main(int argc, char *argv[])
return 0;
} else if (c == 'f') {
double x;
x = atof(optarg);
char *p;
x = strtod(optarg, &p);
if (x < 1.0) opt.mid_occ_frac = x, opt.mid_occ = 0;
else opt.mid_occ = (int)(x + .499);
if (*p == ',') opt.max_occ = (int)(x + .499);
} else if (c == 'u') {
if (*optarg == 'b') opt.flag |= MM_F_SPLICE_FOR|MM_F_SPLICE_REV; // both strands
else if (*optarg == 'f') opt.flag |= MM_F_SPLICE_FOR, opt.flag &= ~MM_F_SPLICE_REV; // match GT-AG