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skip unmapped lines

This commit is contained in:
Heng Li 2022-09-10 08:48:57 -04:00
parent fc6869a9e8
commit 315795eefd
1 changed files with 1 additions and 0 deletions
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misc/paftools.js
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@ -3195,6 +3195,7 @@ function paf_paf2gff(args) {
var hid = 1, last_name = null; var hid = 1, last_name = null;
while (file.readline(buf) >= 0) { while (file.readline(buf) >= 0) {
var m, t = buf.toString().split("\t"); var m, t = buf.toString().split("\t");
if (t[5] == '*') continue; // skip unmapped lines
if (t[0] != last_name) last_name = t[0], hid = 1; if (t[0] != last_name) last_name = t[0], hid = 1;
else ++hid; else ++hid;