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minor cleanup to last commit

This commit is contained in:
Heng Li 2018-03-02 01:07:37 -05:00
parent 953766cedd
commit 2bfdad34bb
1 changed files with 2 additions and 2 deletions
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4
misc/paftools.js
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@ -1104,7 +1104,7 @@ function paf_sam2paf(args)
// parse MD // parse MD
var cs = []; var cs = [];
if (MD != null) { if (MD != null) {
var k = 0, cx = 0, cy = 0, mx = 0, my = 0, error = 0; var k = 0, cx = 0, cy = 0, mx = 0, my = 0;
while ((m = re_MD.exec(MD)) != null) { while ((m = re_MD.exec(MD)) != null) {
if (m[2] != null) { // deletion from the reference if (m[2] != null) { // deletion from the reference
var len = m[2].length - 1; var len = m[2].length - 1;
@ -1133,7 +1133,7 @@ function paf_sam2paf(args)
cy += cl, my += cl, ++k; cy += cl, my += cl, ++k;
} else if (op == 'S') { } else if (op == 'S') {
cy += cl, my += cl, ++k; cy += cl, my += cl, ++k;
} // else: inconsistent } else throw Error("at line " + lineno + ": inconsistent MD tag");
} }
if (ml != 0) throw Error("at line " + lineno + ": inconsistent MD tag"); if (ml != 0) throw Error("at line " + lineno + ": inconsistent MD tag");
} }