From 2833a9c2554c7e124e5be05f04448bd4fce66c60 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Fri, 6 Oct 2017 09:46:59 -0400 Subject: [PATCH] 150bp mason2 simulation --- tex/hs38-simu.sh | 3 +++ 1 file changed, 3 insertions(+) diff --git a/tex/hs38-simu.sh b/tex/hs38-simu.sh index 8fce7ac..dba0c94 100644 --- a/tex/hs38-simu.sh +++ b/tex/hs38-simu.sh @@ -2,3 +2,6 @@ bin/mason_variator -ir hs38.fa -s 1 -ov hs38-s1.vcf --snp-rate 1e-3 --small-indel-rate 2e-4 --sv-indel-rate 0 --sv-inversion-rate 0 --sv-translocation-rate 0 --sv-duplication-rate 0 --max-small-indel-size 10 bin/mason_simulator -ir hs38.fa -iv hs38-s1.vcf -n 1000000 --seed 1 -o s1_1.fq -or s1_2.fq -oa s1.sam --illumina-prob-mismatch-scale 2.5 + +bin/mason_variator -ir hs38.fa -s 2 -ov hs38-s2.vcf --snp-rate 1e-3 --small-indel-rate 2e-4 --sv-indel-rate 0 --sv-inversion-rate 0 --sv-translocation-rate 0 --sv-duplication-rate 0 --max-small-indel-size 10 +bin/mason_simulator -ir hs38.fa -iv hs38-s2.vcf -n 1000000 --seed 1 -o mason-s2_1.fq -or mason-s2_2.fq -oa mason-s2.sam --illumina-prob-mismatch-scale 2.5 --illumina-read-length 150