From 2584a4149a36ccbaa879c3c3a7d57b25acc32255 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Wed, 20 Jun 2018 12:24:43 -0400 Subject: [PATCH] r295: use -r2000 for ava-ont, NOT for ava-pb --- main.c | 2 +- options.c | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/main.c b/main.c index 0d1becc..bec2029 100644 --- a/main.c +++ b/main.c @@ -10,7 +10,7 @@ #include "getopt.h" #endif -#define MM_VERSION "2.10-r794-dirty" +#define MM_VERSION "2.10-r795-dirty" #ifdef __linux__ #include diff --git a/options.c b/options.c index 5168f4f..a35bf8d 100644 --- a/options.c +++ b/options.c @@ -74,11 +74,11 @@ int mm_set_opt(const char *preset, mm_idxopt_t *io, mm_mapopt_t *mo) io->flag = 0, io->k = 15, io->w = 5; mo->flag |= MM_F_ALL_CHAINS | MM_F_NO_DIAG | MM_F_NO_DUAL | MM_F_NO_LJOIN; mo->min_chain_score = 100, mo->pri_ratio = 0.0f, mo->max_gap = 10000, mo->max_chain_skip = 25; + mo->bw = 2000; } else if (strcmp(preset, "ava-pb") == 0) { io->flag |= MM_I_HPC, io->k = 19, io->w = 5; mo->flag |= MM_F_ALL_CHAINS | MM_F_NO_DIAG | MM_F_NO_DUAL | MM_F_NO_LJOIN; mo->min_chain_score = 100, mo->pri_ratio = 0.0f, mo->max_gap = 10000, mo->max_chain_skip = 25; - mo->bw = 2000; } else if (strcmp(preset, "map10k") == 0 || strcmp(preset, "map-pb") == 0) { io->flag |= MM_I_HPC, io->k = 19; } else if (strcmp(preset, "map-ont") == 0) {