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r295: use -r2000 for ava-ont, NOT for ava-pb

This commit is contained in:
Heng Li 2018-06-20 12:24:43 -04:00
parent 66674afd09
commit 2584a4149a
2 changed files with 2 additions and 2 deletions
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2
main.c
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@ -10,7 +10,7 @@
#include "getopt.h"
#endif
#define MM_VERSION "2.10-r794-dirty"
#define MM_VERSION "2.10-r795-dirty"
#ifdef __linux__
#include <sys/resource.h>

2
options.c
View File

@ -74,11 +74,11 @@ int mm_set_opt(const char *preset, mm_idxopt_t *io, mm_mapopt_t *mo)
io->flag = 0, io->k = 15, io->w = 5;
mo->flag |= MM_F_ALL_CHAINS | MM_F_NO_DIAG | MM_F_NO_DUAL | MM_F_NO_LJOIN;
mo->min_chain_score = 100, mo->pri_ratio = 0.0f, mo->max_gap = 10000, mo->max_chain_skip = 25;
mo->bw = 2000;
} else if (strcmp(preset, "ava-pb") == 0) {
io->flag |= MM_I_HPC, io->k = 19, io->w = 5;
mo->flag |= MM_F_ALL_CHAINS | MM_F_NO_DIAG | MM_F_NO_DUAL | MM_F_NO_LJOIN;
mo->min_chain_score = 100, mo->pri_ratio = 0.0f, mo->max_gap = 10000, mo->max_chain_skip = 25;
mo->bw = 2000;
} else if (strcmp(preset, "map10k") == 0 || strcmp(preset, "map-pb") == 0) {
io->flag |= MM_I_HPC, io->k = 19;
} else if (strcmp(preset, "map-ont") == 0) {