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r877: renamed cap-sw-mat to cap-sw-mem

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Heng Li 2018-11-05 11:46:38 -05:00
parent 13981404e2
commit 1ede8ca170
2 changed files with 3 additions and 3 deletions
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4
main.c
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@ -6,7 +6,7 @@
#include "mmpriv.h" #include "mmpriv.h"
#include "ketopt.h" #include "ketopt.h"
#define MM_VERSION "2.13-r876-dirty" #define MM_VERSION "2.13-r877-dirty"
#ifdef __linux__ #ifdef __linux__
#include <sys/resource.h> #include <sys/resource.h>
@ -60,7 +60,7 @@ static ko_longopt_t long_options[] = {
{ "split-prefix", ko_required_argument, 334 }, { "split-prefix", ko_required_argument, 334 },
{ "no-end-flt", ko_no_argument, 335 }, { "no-end-flt", ko_no_argument, 335 },
{ "hard-mask-level",ko_no_argument, 336 }, { "hard-mask-level",ko_no_argument, 336 },
{ "cap-sw-mat", ko_required_argument, 337 }, { "cap-sw-mem", ko_required_argument, 337 },
{ "help", ko_no_argument, 'h' }, { "help", ko_no_argument, 'h' },
{ "max-intron-len", ko_required_argument, 'G' }, { "max-intron-len", ko_required_argument, 'G' },
{ "version", ko_no_argument, 'V' }, { "version", ko_no_argument, 'V' },

2
minimap2.1
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@ -374,7 +374,7 @@ It helps to avoid tiny terminal exons. [6]
Don't filter seeds towards the ends of chains before performing base-level Don't filter seeds towards the ends of chains before performing base-level
alignment. alignment.
.TP .TP
.BI --cap-sw-mat \ NUM .BI --cap-sw-mem \ NUM
Skip alignment if the DP matrix size is above Skip alignment if the DP matrix size is above
.IR NUM . .IR NUM .
Set 0 to disable [0]. Set 0 to disable [0].