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output dist from end instead

This commit is contained in:
Heng Li 2022-09-08 23:35:48 -04:00
parent a2e6659d9b
commit 195c98fa46
1 changed files with 2 additions and 2 deletions
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4
misc/paftools.js
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@ -3202,8 +3202,8 @@ function paf_paf2gff(args) {
var attr = ['transcript_id=' + t[0] + '#' + hid, 'transcript_type=' + type].join(";");
var trans_attr = 'identity=' + (t[9] / t[10]).toFixed(4);
if (np != null) trans_attr += ';positive=' + (np * 3 / t[10]).toFixed(4);
trans_attr += ';find_start=' + (t[2] == 0? 1 : 0);
trans_attr += ';find_end=' + (t[3] == t[1]? 1 : 0);
trans_attr += ';dist_start=' + t[2];
trans_attr += ';dist_end=' + (t[1] - t[3]);
print([t[5], 'paf2gff', 'transcript', t[7] + 1, t[8], score, t[4], '.', attr + ';' + trans_attr].join("\t"));
if (opt.aa && t[4] == '-') {
var b = [], len = t[8] - t[7];