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potentially fix issue #372 

Needs someone to confirm
This commit is contained in:
Heng Li 2019-04-30 21:49:51 -04:00
parent 69af86657e
commit 189555503a
1 changed files with 1 additions and 1 deletions
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python/mappy.pyx
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@ -142,7 +142,7 @@ cdef class Aligner:
if fn_idx_out is None: if fn_idx_out is None:
r = cmappy.mm_idx_reader_open(str.encode(fn_idx_in), &self.idx_opt, NULL) r = cmappy.mm_idx_reader_open(str.encode(fn_idx_in), &self.idx_opt, NULL)
else: else:
r = cmappy.mm_idx_reader_open(str.encode(fn_idx_in), &self.idx_opt, fn_idx_out) r = cmappy.mm_idx_reader_open(str.encode(fn_idx_in), &self.idx_opt, str.encode(fn_idx_out))
if r is not NULL: if r is not NULL:
self._idx = cmappy.mm_idx_reader_read(r, n_threads) # NB: ONLY read the first part self._idx = cmappy.mm_idx_reader_read(r, n_threads) # NB: ONLY read the first part
cmappy.mm_idx_reader_close(r) cmappy.mm_idx_reader_close(r)