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r457: fixed a bug on parsing -f

This commit is contained in:
Heng Li 2017-09-30 00:00:44 -04:00
parent ee9b2773a8
commit 0fd0f2aed1
1 changed files with 2 additions and 2 deletions
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4
main.c
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@ -6,7 +6,7 @@
#include "mmpriv.h" #include "mmpriv.h"
#include "getopt.h" #include "getopt.h"
#define MM_VERSION "2.2-r456-dirty" #define MM_VERSION "2.2-r457-dirty"
#ifdef __linux__ #ifdef __linux__
#include <sys/resource.h> #include <sys/resource.h>
@ -129,7 +129,7 @@ int main(int argc, char *argv[])
x = strtod(optarg, &p); x = strtod(optarg, &p);
if (x < 1.0) opt.mid_occ_frac = x, opt.mid_occ = 0; if (x < 1.0) opt.mid_occ_frac = x, opt.mid_occ = 0;
else opt.mid_occ = (int)(x + .499); else opt.mid_occ = (int)(x + .499);
if (*p == ',') opt.max_occ = (int)(x + .499); if (*p == ',') opt.max_occ = (int)(strtod(p+1, &p) + .499);
} else if (c == 'u') { } else if (c == 'u') {
if (*optarg == 'b') opt.flag |= MM_F_SPLICE_FOR|MM_F_SPLICE_REV; // both strands if (*optarg == 'b') opt.flag |= MM_F_SPLICE_FOR|MM_F_SPLICE_REV; // both strands
else if (*optarg == 'f') opt.flag |= MM_F_SPLICE_FOR, opt.flag &= ~MM_F_SPLICE_REV; // match GT-AG else if (*optarg == 'f') opt.flag |= MM_F_SPLICE_FOR, opt.flag &= ~MM_F_SPLICE_REV; // match GT-AG