diff --git a/map.c b/map.c index a8c6854..9565fe3 100644 --- a/map.c +++ b/map.c @@ -385,7 +385,8 @@ static void *worker_pipeline(void *shared, int step, void *in) if (r->p) printf("\t%d\t%d\t255", r->p->blen - r->p->n_ambi - r->p->n_diff, r->p->blen); else printf("\t%d\t%d\t255", r->score, r->re - r->rs > r->qe - r->qs? r->re - r->rs : r->qe - r->qs); printf("\tcm:i:%d", r->cnt); - if (r->parent == j) printf("\tss:i:%d", r->subsc); + if (r->p) printf("\ts1:i:%d", r->score); + if (r->parent == j) printf("\ts2:i:%d", r->subsc); if (r->p) { uint32_t k; printf("\tNM:i:%d\tAS:i:%d\tnn:i:%d\tcg:Z:", r->p->n_diff, r->p->score, r->p->n_ambi);