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Merge remote-tracking branch 'remotes/origin/master'

This commit is contained in:
Heng Li 2018-09-14 22:22:20 -04:00
parent 7d80d6de4a 791e89ce0f
commit 0b681e51e7
1 changed files with 4 additions and 2 deletions
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6
python/minimap2.py
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@ -1,6 +1,7 @@
#!/usr/bin/env python #!/usr/bin/env python
import sys, getopt import sys
import getopt
import mappy as mp import mappy as mp
def main(argv): def main(argv):
@ -17,7 +18,8 @@ def main(argv):
print(" -c output the cs tag") print(" -c output the cs tag")
sys.exit(1) sys.exit(1)
preset, min_cnt, min_sc, k, w, bw, out_cs = None, None, None, None, None, None, False preset = min_cnt = min_sc = k = w = bw = None
out_cs = False
for opt, arg in opts: for opt, arg in opts:
if opt == '-x': preset = arg if opt == '-x': preset = arg
elif opt == '-n': min_cnt = int(arg) elif opt == '-n': min_cnt = int(arg)