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r979: fixed asmgene wrong report. Resolves #581.

This commit is contained in:
Heng Li 2020-04-06 19:57:15 -04:00
parent cb56fb762a
commit 0a5e386359
1 changed files with 2 additions and 2 deletions
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4
misc/paftools.js
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@ -1,6 +1,6 @@
#!/usr/bin/env k8 #!/usr/bin/env k8
var paftools_version = '2.17-r975-dirty'; var paftools_version = '2.17-r979-dirty';
/***************************** /*****************************
***** Library functions ***** ***** Library functions *****
@ -898,7 +898,7 @@ function paf_asmgene(args)
if (auto_only && /^(chr)?[XY]$/.test(refpos[g][2])) continue; if (auto_only && /^(chr)?[XY]$/.test(refpos[g][2])) continue;
for (var i = 0; i < n_fn; ++i) { for (var i = 0; i < n_fn; ++i) {
if (gene[g][i] == null) { if (gene[g][i] == null) {
rst[4][i]++; rst[5][i]++;
if (print_err) print('M', header[i], refpos[g].join("\t")); if (print_err) print('M', header[i], refpos[g].join("\t"));
} else if (gene[g][i][0] == 1) rst[0][i]++; } else if (gene[g][i][0] == 1) rst[0][i]++;
else if (gene[g][i][0] > 1) { else if (gene[g][i][0] > 1) {