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r271: added "short" preset; for testing only

This commit is contained in:
Heng Li 2017-08-07 15:30:05 -04:00
parent 0137d0dfab
commit 079ec0d283
1 changed files with 11 additions and 1 deletions
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12
main.c
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@ -8,7 +8,7 @@
#include "minimap.h"
#include "mmpriv.h"
#define MM_VERSION "2.0rc1-r238-dirty"
#define MM_VERSION "2.0rc1-r271-dirty"
void liftrlimit()
{
@ -129,6 +129,16 @@ int main(int argc, char *argv[])
k = 19, w = 19;
opt.a = 1, opt.b = 9, opt.q = 16, opt.q2 = 41, opt.e = 2, opt.e2 = 1, opt.zdrop = 200;
opt.min_dp_max = 200;
} else if (strcmp(optarg, "short") == 0) {
k = 17, w = 7, is_hpc = 0;
opt.a = 2, opt.b = 8, opt.q = 12, opt.e = 2, opt.q2 = 32, opt.e2 = 1;
opt.max_gap = 100;
opt.pri_ratio = 0.5f;
opt.min_cnt = 2;
opt.min_chain_score = 20;
opt.min_dp_max = 50;
opt.best_n = 10;
opt.bw = 100;
} else {
fprintf(stderr, "[E::%s] unknown preset '%s'\n", __func__, optarg);
return 1;