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r943: allow long ref name for --split-index 

Resolved #394.
This commit is contained in:
Heng Li 2019-05-10 15:39:41 -04:00
parent 7bc87b4175
commit 05974c80f1
2 changed files with 5 additions and 5 deletions
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2
main.c
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@ -6,7 +6,7 @@
#include "mmpriv.h" #include "mmpriv.h"
#include "ketopt.h" #include "ketopt.h"
#define MM_VERSION "2.17-r941" #define MM_VERSION "2.17-r943-dirty"
#ifdef __linux__ #ifdef __linux__
#include <sys/resource.h> #include <sys/resource.h>

8
splitidx.c
View File

@ -19,9 +19,9 @@ FILE *mm_split_init(const char *prefix, const mm_idx_t *mi)
mm_err_fwrite(&k, 4, 1, fp); mm_err_fwrite(&k, 4, 1, fp);
mm_err_fwrite(&mi->n_seq, 4, 1, fp); mm_err_fwrite(&mi->n_seq, 4, 1, fp);
for (i = 0; i < mi->n_seq; ++i) { for (i = 0; i < mi->n_seq; ++i) {
uint8_t l; uint32_t l;
l = strlen(mi->seq[i].name); l = strlen(mi->seq[i].name);
mm_err_fwrite(&l, 1, 1, fp); mm_err_fwrite(&l, 1, 4, fp);
mm_err_fwrite(mi->seq[i].name, 1, l, fp); mm_err_fwrite(mi->seq[i].name, 1, l, fp);
mm_err_fwrite(&mi->seq[i].len, 4, 1, fp); mm_err_fwrite(&mi->seq[i].len, 4, 1, fp);
} }
@ -60,8 +60,8 @@ mm_idx_t *mm_split_merge_prep(const char *prefix, int n_splits, FILE **fp, uint3
for (i = j = 0; i < n_splits; ++i) { for (i = j = 0; i < n_splits; ++i) {
uint32_t k; uint32_t k;
for (k = 0; k < n_seq_part[i]; ++k, ++j) { for (k = 0; k < n_seq_part[i]; ++k, ++j) {
uint8_t l; uint32_t l;
mm_err_fread(&l, 1, 1, fp[i]); mm_err_fread(&l, 1, 4, fp[i]);
mi->seq[j].name = (char*)calloc(l + 1, 1); mi->seq[j].name = (char*)calloc(l + 1, 1);
mm_err_fread(mi->seq[j].name, 1, l, fp[i]); mm_err_fread(mi->seq[j].name, 1, l, fp[i]);
mm_err_fread(&mi->seq[j].len, 4, 1, fp[i]); mm_err_fread(&mi->seq[j].len, 4, 1, fp[i]);