From 02145b2166f4ba6779806736865653047794b9a1 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Sat, 1 Jul 2017 11:48:37 -0400 Subject: [PATCH] explain option -d --- minimap2.1 | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/minimap2.1 b/minimap2.1 index 5185492..0c7324e 100644 --- a/minimap2.1 +++ b/minimap2.1 @@ -104,7 +104,15 @@ Save the minimizer index of .I target.fa to .I FILE -[no dump] +[no dump]. Minimap2 indexing is fast. It can index the human genome in a couple +of minutes. If even shorter startup time is desired, use this option to save +the index. Indexing options are fixed in the index file. When an index file is +provided as the target sequences, options +.BR -H , +.BR -k , +.BR -w , +.B -I +will be effectively overridden by the options stored in the index file. .SS Mapping options .TP 10 .BI -f \ FLOAT