From 01b98e8e52a8acfed5a9d57853f028267eaf045f Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@me.com>
Date: Tue, 17 Jan 2023 09:09:25 -0500
Subject: [PATCH] r1155: fixed a bug on parsing --rmq

resolves #1010
---
 main.c | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/main.c b/main.c
index ea95664..3a38e8e 100644
--- a/main.c
+++ b/main.c
@@ -7,7 +7,7 @@
 #include "mmpriv.h"
 #include "ketopt.h"
 
-#define MM_VERSION "2.24-r1150-dirty"
+#define MM_VERSION "2.24-r1155-dirty"
 
 #ifdef __linux__
 #include <sys/resource.h>
@@ -262,7 +262,8 @@ int main(int argc, char *argv[])
 		} else if (c == 326) { // --dual
 			yes_or_no(&opt, MM_F_NO_DUAL, o.longidx, o.arg, 0);
 		} else if (c == 347) { // --rmq
-			yes_or_no(&opt, MM_F_RMQ, o.longidx, o.arg, 1);
+			if (o.arg) yes_or_no(&opt, MM_F_RMQ, o.longidx, o.arg, 1);
+			else opt.flag |= MM_F_RMQ;
 		} else if (c == 'S') {
 			opt.flag |= MM_F_OUT_CS | MM_F_CIGAR | MM_F_OUT_CS_LONG;
 			if (mm_verbose >= 2)