minimap2/misc.c

#include <sys/resource.h>
#include <sys/time.h>
#include "minimap.h"

int mm_verbose = 3;
int mm_dbg_flag = 0;
double mm_realtime0;

double cputime()
{
	struct rusage r;
	getrusage(RUSAGE_SELF, &r);
	return r.ru_utime.tv_sec + r.ru_stime.tv_sec + 1e-6 * (r.ru_utime.tv_usec + r.ru_stime.tv_usec);
}

double realtime()
{
	struct timeval tp;
	struct timezone tzp;
	gettimeofday(&tp, &tzp);
	return tp.tv_sec + tp.tv_usec * 1e-6;
}

#include "ksort.h"

#define sort_key_128x(a) ((a).x)
KRADIX_SORT_INIT(128x, mm128_t, sort_key_128x, 8) 

#define sort_key_64(x) (x)
KRADIX_SORT_INIT(64, uint64_t, sort_key_64, 8)

KSORT_INIT_GENERIC(uint32_t)