2017-06-06 22:16:33 +08:00
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#ifndef MMPRIV2_H
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#define MMPRIV2_H
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#include "minimap.h"
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#ifdef __cplusplus
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extern "C" {
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#endif
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double cputime(void);
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double realtime(void);
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void radix_sort_128x(mm128_t *beg, mm128_t *end);
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void radix_sort_64(uint64_t *beg, uint64_t *end);
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uint32_t ks_ksmall_uint32_t(size_t n, uint32_t arr[], size_t kk);
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2017-06-07 03:31:21 +08:00
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int mm_chain_dp(int max_dist, int bw, int max_skip, int min_sc, int n, mm128_t *a, uint64_t **_u, void *km);
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2017-06-06 22:16:33 +08:00
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2017-06-24 01:44:45 +08:00
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void mm_align_skeleton(void *km, const mm_mapopt_t *opt, const mm_idx_t *mi, int qlen, const char *qstr, int n_regs, mm_reg1_t *regs, mm128_t *a);
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2017-06-06 22:16:33 +08:00
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#ifdef __cplusplus
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}
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#endif
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#endif
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