2025-11-07 21:31:11 +08:00
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/*********************************************************************************************
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Description: data and files for debugging
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Copyright : All right reserved by NCIC.ICT
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Author : Zhang Zhonghai
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Date : 2024/04/09
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***********************************************************************************************/
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#include <stdio.h>
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#include <stdint.h>
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////////////////// for debug and test //////////////////////////
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2025-11-16 01:37:21 +08:00
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// #define DEBUG_FILE_OUTPUT // 打开gfp1-4文件，并记录debug信息
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2025-11-07 21:31:11 +08:00
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// #define COUNT_SEED_LENGTH // 记录seed匹配数量降低到1时的长度，以及最终扩展的长度
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// #define GET_FULL_MATCH_READ // 获取完全匹配的reads
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// #define COUNT_CALC_NUM // 统计BSW的剪枝后的计算量和未剪枝前的计算量
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// #define GET_DIFFERENT_EXTENSION_LENGTH // 获取不同长度extension的query，target，和其他用于计算的数据
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// #define GET_KSW_ALIGN_SEQ
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// #define DEBUG_SW_EXTEND // 将bsw的分值输入到debug文件里
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////////////////////////////////////////////////////////////////
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extern FILE *gf[4], *gfq[4], *gft[4], *gfi[4];
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extern uint64_t debug_num;
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extern uint64_t all_match_len;
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extern uint64_t all_seq_num;
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extern uint64_t all_type_hits;
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extern double seed_time;
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int open_qti_files();
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int open_debug_files();
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int close_files();
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