hanna fff15944fe Bug fix. Stopping condition of recurrence stopped too soon in some cases where an interval *contained* zero reads but *overlapped* with some reads. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2874 348d0f76-0448-11de-a6fe-93d51630548a		2010-02-23 15:58:54 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Bug fix. Stopping condition of recurrence stopped too soon in some cases where an interval *contained* zero reads but *overlapped* with some reads.	2010-02-23 15:58:54 +00:00
test/org/broadinstitute/sting	adding code to deal with the off-spec situation where our minimum likelihood is above the GLF max of 255.	2010-02-22 22:27:39 +00:00