ebanks ffeb3fd80d Thanks to Guillermo, I found a bug in the Unified Genotyper output: GL was posteriors instead of likelihoods. Not a huge deal because the ... priors were flat, but fixed nonetheless. Also, needed to update Tribble. Minor updates to the Beagle input maker. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3461 348d0f76-0448-11de-a6fe-93d51630548a		2010-05-28 19:28:26 +00:00
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analyzeconcordance	The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had	2010-04-20 15:26:32 +00:00
examples	Update naming for consistency.	2009-06-30 22:03:21 +00:00
gatk/walkers	Thanks to Guillermo, I found a bug in the Unified Genotyper output: GL was posteriors instead of likelihoods. Not a huge deal because the	2010-05-28 19:28:26 +00:00
tools	BaseUtils has more clear distinction between byte and char routines. All char routines are @Depreciated now. Please use bytes. Better organization of reverse(), now in Utils not BaseUtils.	2010-05-20 14:05:13 +00:00
utils	some quick changes to the VE output system - more to come.	2010-04-23 21:55:08 +00:00