Mark DePristo ffea6dd95f HaplotypeCaller now has the ability to only consider the best N haplotypes for genotyping ... -- Added a -dontGenotype mode for testing assembly efficiency -- However, it looks like this has a very negative impact on the quality of the results, so the code should be deleted		2013-03-20 22:54:36 -04:00
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java	HaplotypeCaller now has the ability to only consider the best N haplotypes for genotyping	2013-03-20 22:54:36 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00