Eric Banks ffaf92f871 Added new functionality to the FastaAlternateReferenceMaker to have it output IUPAC codes for het sites. ... Enable it with the new --useIUPAC argument. Added both unit and integration tests for the new functionality - and fixed up the exising tests once I was in there.		2014-03-12 14:31:57 -04:00
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gatk-protected	Added new functionality to the FastaAlternateReferenceMaker to have it output IUPAC codes for het sites.	2014-03-12 14:31:57 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.1 development	2014-03-06 00:05:58 -05:00