gatk3的最后一个经典版本3.8

Mauricio Carneiro ff2f4df043 Fixed hardclipping inside indel (right tail) ... when hard clipping the right tail of a read falls inside a deletion, clipping should fall back to the last base before the deletion to follow the ReadClipper's contract.		2011-09-28 16:07:34 -04:00
public	Fixed hardclipping inside indel (right tail)	2011-09-28 16:07:34 -04:00
settings	Merged bug fix from Stable into Unstable	2011-09-27 14:34:39 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	To work around potential problem with invalid javax.mail 1.4.1 in ivy cache, added explicit javax.mail 1.4.4 along with build.xml code to remove 1.4.1.	2011-09-20 00:14:35 -04:00
ivy.xml	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00