ff26f2bf68
-- This behavior, which isn't obviously valuable at all, continued to grab and rethrow exceptions in the HMS that, if run without NT, would show up as more meaningful errors. Now HMS simply checks whether the throwable it received on error was a RuntimeException. If so, it is stored and rethrow without wrapping later. If it isn't, only in this case is the exception wrapped in a ReviewedStingException. -- Added a QC walker ErrorThrowingWalker that will throw a UserException, ReviewedStingException, and NullPointerException from map as specified on the command line -- Added IT that ensures that all three types are thrown properly (i.e., you catch a NullPointerException when you ask for one to be thrown) with and without threading enabled. -- I believe this will finally put to rest all of these annoying HMS captures. |
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| .. | ||
| datasources | ||
| executive | ||
| filters | ||
| iterators | ||
| refdata | ||
| report | ||
| samples | ||
| traversals | ||
| walkers | ||
| EngineFeaturesIntegrationTest.java | ||
| GenomeAnalysisEngineUnitTest.java | ||
| WalkerManagerUnitTest.java | ||